PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G230000.1
Common NameB456_001G230000, LOC105804328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 309aa    MW: 34481.5 Da    PI: 7.3246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G230000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09164211455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.001G230000.1 164 SHSLAERVRREKISERMKLLQDLVPGC----NKVIGKAVMLDEIIKYVQSLQ 211
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-9158215No hitNo description
SuperFamilySSF474597.85E-17158228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17161228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDNQFSLNAP PFHLEPSLSA SYYLSSAMDI HATELNCSQH CEQPTDYYGL HFHLPLSSMP  60
SQVGGFQGNN NNISPLQGRS KSVTSQNESL LNPNADLEAS KYWNSRKRTK TVETSASPTI  120
AAKGSERNQE SNEKRSNTNT NTKPLEPPKD YIHVRARRGE ATDSHSLAER VRREKISERM  180
KLLQDLVPGC NKVIGKAVML DEIIKYVQSL QRQVEFLSMK LASVNSRLDF KLDSVMSEDI  240
FQSNNNFAHP ISTIDSWASA IFGQQQQNLA LHSNVSNGTM TQCSVQPMDT AIWPQLQHPF  300
TSNQLPLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168745e-91JX616874.1 Gossypium hirsutum clone NBRI_GE61821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492348.10.0PREDICTED: transcription factor bHLH62-like
SwissprotQ9SRT22e-63BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D2ND150.0A0A0D2ND15_G
STRINGGLYMA18G32560.12e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2458634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]